Players move through towns, fields, caves, and enemy-filled side-scrolling stages while searching for the route to each area’s boss. Goemon attacks with his pipe, jumps across hazards, collects money, and obtains temporary or permanent power-ups. Ebisumaru uses his own weapon and can be controlled by a second player.

The game alternates between exploration and linear action stages. Towns contain shops, minigames, information, and story events, while boss battles test movement and attack timing. Progress is made by clearing regions, acquiring useful items, and defeating their bosses.

Explore towns before leaving, since shops and minigames can provide health, lives, money, and useful equipment. Break suspicious objects and inspect side paths for hidden items.

In combat, keep moving and attack enemies from a safe distance when possible. Save stronger weapons or power-ups for bosses, learn their attack patterns, and avoid rushing into crowded areas.